SRX6931420
Gascroc Cre postTAM ChIP-seq H3K27ac rep3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Muscle
Cell type
gastrocnemius
NA
NA

Attributes by original data submitter

Sample

Sample #
ICE_NGS_#9
strain
C57BL/6
age
16 mo.
sex
male
tissue
Gastrocnemius

Sequenced DNA Library

library_name
SINCLAIR_NGS_00039
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27673064
Reads aligned (%)
49.4
Duplicates removed (%)
53.0
Number of peaks
16023 (qval < 1E-05)

mm9

Number of total reads
27673064
Reads aligned (%)
49.3
Duplicates removed (%)
53.1
Number of peaks
16003 (qval < 1E-05)

Base call quality data from DBCLS SRA