SRX6931416
Gascroc ICE postTAM ChIP-seq Input rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Muscle
Cell type
gastrocnemius
NA
NA

Attributes by original data submitter

Sample

Sample #
ICE_NGS_#11
strain
C57BL/6
age
16 mo.
sex
male
tissue
Gastrocnemius

Sequenced DNA Library

library_name
SINCLAIR_NGS_00035
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24220939
Reads aligned (%)
97.1
Duplicates removed (%)
24.6
Number of peaks
362 (qval < 1E-05)

mm9

Number of total reads
24220939
Reads aligned (%)
96.9
Duplicates removed (%)
24.7
Number of peaks
299 (qval < 1E-05)

Base call quality data from DBCLS SRA