Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
monocyte
cell line
THP1
inhibitor treatment
iBET-BD1
stimulation
PMA
stimulation protocol
2 hours of 40nM PMA after 30 minutes of pretreatment with BET inhibitor
antibody
BRD4(EPR5150(2);Abcam;ab128874;lot GR3251918-3)
replicate
2

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
19606557
Reads aligned (%)
95.6
Duplicates removed (%)
13.6
Number of peaks
12375 (qval < 1E-05)

hg19

Number of total reads
19606557
Reads aligned (%)
95.2
Duplicates removed (%)
14.4
Number of peaks
12339 (qval < 1E-05)

Base call quality data from DBCLS SRA