Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PSIP1

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
cell type
Primary CD4+ T cells
chip antibody
anti-LEDGF/p75 (Bethyl, A300-848)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
53202962
Reads aligned (%)
88.9
Duplicates removed (%)
42.5
Number of peaks
2109 (qval < 1E-05)

hg19

Number of total reads
53202962
Reads aligned (%)
88.3
Duplicates removed (%)
43.0
Number of peaks
1950 (qval < 1E-05)

Base call quality data from DBCLS SRA