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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: IMR-90
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6878425
GSM4087663: Low Cell CTCF siRNA 144hrs CTCF Rep1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
IMR90 lung fibroblasts
cell line
IMR90 lung fibroblasts
chip antibody
CTCF
treatment
20nM CTCF siRNA pool
time
144hrs
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were harvested according to Active Motif Low-Cell ChIP-seq kit (Cat no. 53084) Libraries were prepared according to Active Motif Low-Cell ChIP-seq kit (Cat no. 53084) Low Cell ChIP-seq
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
25752762
Reads aligned (%)
97.4
Duplicates removed (%)
1.9
Number of peaks
60 (qval < 1E-05)
hg19
Number of total reads
25752762
Reads aligned (%)
97.0
Duplicates removed (%)
1.9
Number of peaks
46 (qval < 1E-05)
Base call quality data from
DBCLS SRA