Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+ thymic subpopulation
donor
137
cell type
CD34+ thymic subpopulation

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitated DNA was purified by QIAquick PCR Purification Kit (Qiagen, Cat#28104) Single-end sequencing 75bp was performed using Illumina NextSeq 500.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
20140433
Reads aligned (%)
90.6
Duplicates removed (%)
5.5
Number of peaks
1027 (qval < 1E-05)

hg19

Number of total reads
20140433
Reads aligned (%)
89.6
Duplicates removed (%)
7.1
Number of peaks
977 (qval < 1E-05)

Base call quality data from DBCLS SRA