Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D
cell line
T47D
cell type
Mammary gland ductal carcarcinoma epithelial cells derived from metastatic site
cell source
ATCC #HTB-133
modifications
pLKO-tet-on-shRING1B dox-inducible
chip antibody
Abcam ab23738

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
41574946
Reads aligned (%)
86.9
Duplicates removed (%)
11.3
Number of peaks
42453 (qval < 1E-05)

hg38

Number of total reads
41574946
Reads aligned (%)
88.6
Duplicates removed (%)
10.2
Number of peaks
42640 (qval < 1E-05)

Base call quality data from DBCLS SRA