Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Uterus
Cell type
Myometrium
MeSH Description
The smooth muscle coat of the uterus, which forms the main mass of the organ.

Attributes by original data submitter

Sample

source_name
Myometrium
Stage
Nonpregnant at the proliferative phase
tissue
myometrial tissue
chip antibody
Anti-PGR antibody (sc-7208, Santa Cruz Biotechnology, Dallas, TX)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin samples were prepared by Active Motif Services - Factor Path assays Libraries were prepared by Active Motif Services - Factor Path assays

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
38276951
Reads aligned (%)
75.7
Duplicates removed (%)
20.5
Number of peaks
16281 (qval < 1E-05)

hg38

Number of total reads
38276951
Reads aligned (%)
76.9
Duplicates removed (%)
19.7
Number of peaks
16373 (qval < 1E-05)

Base call quality data from DBCLS SRA