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For hg38
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: PGR
wikigenes
PDBj
CellType: Myometrium
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6857970
GSM4081681: Myometrial tissue, subject NP1 (ChIP-Seq); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
PGR
Cell type
Cell type Class
Uterus
Cell type
Myometrium
MeSH Description
The smooth muscle coat of the uterus, which forms the main mass of the organ.
Attributes by original data submitter
Sample
source_name
Myometrium
Stage
Nonpregnant at the proliferative phase
tissue
myometrial tissue
chip antibody
Anti-PGR antibody (sc-7208, Santa Cruz Biotechnology, Dallas, TX)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin samples were prepared by Active Motif Services - Factor Path assays Libraries were prepared by Active Motif Services - Factor Path assays
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
33058724
Reads aligned (%)
94.9
Duplicates removed (%)
19.0
Number of peaks
25325 (qval < 1E-05)
hg19
Number of total reads
33058724
Reads aligned (%)
94.5
Duplicates removed (%)
19.6
Number of peaks
25283 (qval < 1E-05)
Base call quality data from
DBCLS SRA