Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX2

Cell type

Cell type Class
Lung
Cell type
LK-2
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
LK2_GFP_Sox2
cell line
LK2_GFP
cell type
lung squamous cell carcinoma (LUSC) cell lines
chip antibody
Sox2 (R&D, AF2018)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
24943351
Reads aligned (%)
108.4
Duplicates removed (%)
14.5
Number of peaks
18323 (qval < 1E-05)

hg38

Number of total reads
24943351
Reads aligned (%)
109.4
Duplicates removed (%)
14.2
Number of peaks
18453 (qval < 1E-05)

Base call quality data from DBCLS SRA