Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Parasegment 7
NA
NA

Attributes by original data submitter

Sample

source_name
inp_CP190_PS7
tissue
embryo
age
5-13h
tissue subtype
parasegment 7
chip antibody
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were digested with MNase, solubilized and ChIP performed using the appropriate antibody. Libraries were prepared as described in Bowman et al., 2013.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
29972260
Reads aligned (%)
89.5
Duplicates removed (%)
68.3
Number of peaks
1291 (qval < 1E-05)

dm3

Number of total reads
29972260
Reads aligned (%)
90.1
Duplicates removed (%)
67.1
Number of peaks
1464 (qval < 1E-05)

Base call quality data from DBCLS SRA