Antigen

Antigen Class

TFs and others

Antigen

Cp190

Cell type

Cell type Class

Embryo

Cell type

5-13h embryos

NA

NA

Sample

source_name

CP190_mixed

tissue

embryo

age

5-13h

tissue subtype

whole embryo

chip antibody

anti-CP190

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Nuclei were digested with MNase, solubilized and ChIP performed using the appropriate antibody. Libraries were prepared as described in Bowman et al., 2013.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

dm3

Number of total reads

42948360

Reads aligned (%)

38.5

Duplicates removed (%)

84.5

Number of peaks

3569 (qval < 1E-05)

dm6

Number of total reads

42948360

Reads aligned (%)

38.1

Duplicates removed (%)

85.7

Number of peaks

2328 (qval < 1E-05)