Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Uterus

Cell type

HeLa

Primary Tissue

Cervix

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

HeLa

cell type

Cervical cancer cells

cell line

HeLa

chip antibody

None

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-seq library was prepared as per the instructions of user manual of NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (Catalog # E7370) with certain optimization and initial 100 ng of DNA purified after ChIP.

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

44257494

Reads aligned (%)

46.5

Duplicates removed (%)

6.8

Number of peaks

1421 (qval < 1E-05)

hg19

Number of total reads

44257494

Reads aligned (%)

45.6

Duplicates removed (%)

7.5

Number of peaks

593 (qval < 1E-05)