Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA2

Cell type

Cell type Class
Blood
Cell type
TSU-1621MT
NA
NA

Attributes by original data submitter

Sample

source_name
TSU-1621-MT_ChIP GATA2
cell line
TSU-1621-MT
antibody target
GATA2
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies. RNA was extracted using qiagen RNeasy kit according to manufacturer instructions and total RNA was treated using Ribo-zero to remove rRNA according to manufacturer instructions. ChIP seq and RNA-seq libraries were prepared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
45832262
Reads aligned (%)
96.8
Duplicates removed (%)
55.5
Number of peaks
2675 (qval < 1E-05)

hg19

Number of total reads
45832262
Reads aligned (%)
95.9
Duplicates removed (%)
56.7
Number of peaks
2605 (qval < 1E-05)

Base call quality data from DBCLS SRA