Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Hematopoietic Stem Cells
MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by original data submitter

Sample

source_name
Primary haematopoietic/erythroid progenitor cells
strain
C57BL/6
developmental stage
adult (12w)
tissue
bone marrow
cell type
Primary haematopoietic progenitor cells isolated from bone marrow
immunophenotype
LSK Flt3- CD48+ CD150+

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were transposed with Tn5 transposase for ATAC-seq library preparation as described in the Methods section of the paper ATAC-seq transposed DNA was amplified using custom barcoded oligonucleotides as described in the Methods section of the paper

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
50372999
Reads aligned (%)
17.6
Duplicates removed (%)
28.7
Number of peaks
10899 (qval < 1E-05)

mm9

Number of total reads
50372999
Reads aligned (%)
17.6
Duplicates removed (%)
28.8
Number of peaks
10953 (qval < 1E-05)

Base call quality data from DBCLS SRA