Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pc

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
D. Melanogaster_PC Phdel
genotype/variation
PH del mutant
tissue
embryos
age
16-18 hrs
chip antibody
PC

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin prepared from Drosophila embryos was immunoprecipitated with specific antibodies and precipitated DNA was isolated (see mat and methods for details) Libraries were prepared according to Illumina's instructions

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
45299700
Reads aligned (%)
16.7
Duplicates removed (%)
65.3
Number of peaks
2573 (qval < 1E-05)

dm6

Number of total reads
45299700
Reads aligned (%)
15.7
Duplicates removed (%)
66.8
Number of peaks
2759 (qval < 1E-05)

Base call quality data from DBCLS SRA