Curated Sample Data


Genome
dm3
Antigen Class
Histone
Antigen
H3K4me3
Cell type Class
Embryo
Cell type
4-12h embryos

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
D. Melanogaster_H3K4me3
genotype/variation
wild type
tissue
embryos
age
4-12 hrs
chip antibody
H3K4me3, Millipore #07-473

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin prepared from Drosophila embryos was immunoprecipitated with specific antibodies and precipitated DNA was isolated (see mat and methods for details) Libraries were prepared according to Illumina's instructions

Platform Information


instrument_model
Illumina Genome Analyzer IIx

External Database Query

Logs in read processing pipeline


Number of total reads
4205145
Reads aligned (%)
94.4
Duplicates removed (%)
48.1
Number of peaks
3011 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA