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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me3
wikigenes
PDBj
CellType: 4-12h embryos
ATCC
MeSH
RIKEN BRC
SRX681797
GSM1479941: H3K4me3 Mel Rep2; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me3
Cell type
Cell type Class
Embryo
Cell type
4-12h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
D. Melanogaster_H3K4me3
genotype/variation
wild type
tissue
embryos
age
4-12 hrs
chip antibody
H3K4me3, Millipore #07-473
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin prepared from Drosophila embryos was immunoprecipitated with specific antibodies and precipitated DNA was isolated (see mat and methods for details) Libraries were prepared according to Illumina's instructions
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
4205145
Reads aligned (%)
93.7
Duplicates removed (%)
49.6
Number of peaks
3204 (qval < 1E-05)
dm3
Number of total reads
4205145
Reads aligned (%)
94.4
Duplicates removed (%)
48.1
Number of peaks
3010 (qval < 1E-05)
Base call quality data from
DBCLS SRA