Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MLLT3

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Hela cells
cell type
Hela Cells
treatment
3Flag-AF9 stable
chip antibody
Sigma HPA001824

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq were performed following the protocol: Using ChIP-seq technology to generate high-resolution profiles of histone modifications. O'Geen H, Echipare L, Farnham PJ. Methods Mol Biol. 2011;791:265-86. doi: 10.1007/978-1-61779-316-5_20. Library was contracted by the MD Anderson DNA sequencing Core facility following standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
40470355
Reads aligned (%)
86.7
Duplicates removed (%)
3.6
Number of peaks
1210 (qval < 1E-05)

hg38

Number of total reads
40470355
Reads aligned (%)
88.9
Duplicates removed (%)
1.9
Number of peaks
1028 (qval < 1E-05)

Base call quality data from DBCLS SRA