Antigen

Antigen Class

TFs and others

Antigen

Usf1

Cell type

Cell type Class

Blood

Cell type

CH12

Tissue

Blood

Lineage

cellLine

Description

B-cell lymphoma (GM12878 analog)

Sample

age

unknown

donor ID

ENCDO324YEK

dev stage

unknown

sample type

immortalized cell line

sex

female

cell line

CH12.LX

health state

unknown

lab

Michael Snyder, Stanford

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/f710178a-26e4-4afa-b925-37e6c9dbad34/@@download/attachment/wgEncodeSydhTfbs.release4.html.pdf

Sequencing Platform

instrument_model

Illumina Genome Analyzer

mm10

Number of total reads

22739207

Reads aligned (%)

96.0

Duplicates removed (%)

15.5

Number of peaks

9010 (qval < 1E-05)

mm9

Number of total reads

22739207

Reads aligned (%)

95.8

Duplicates removed (%)

15.6

Number of peaks

9049 (qval < 1E-05)