SRX6784051
GSM4051121: Control ChIP-seq from K562 (ENCLB827GLA); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample_type
cell line
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Kevin White, UChicago
passage number
5
cell_line
K562
health state
chronic myelogenous leukemia (CML)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
other: https://www.encodeproject.org/documents/7b8b9252-3685-45ce-a6d1-a2a1201d6883/@@download/attachment/2015-3261.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
76753499
Reads aligned (%)
98.6
Duplicates removed (%)
6.1
Number of peaks
7933 (qval < 1E-05)

hg19

Number of total reads
76753499
Reads aligned (%)
98.1
Duplicates removed (%)
7.0
Number of peaks
3156 (qval < 1E-05)

Base call quality data from DBCLS SRA