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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6784037
GSM4051108: Control ChIP-seq from K562 (ENCLB711UGZ); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
sample_type
cell line
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Kevin White, UChicago
passage number
4
cell_line
K562
health state
chronic myelogenous leukemia (CML)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
other: https://www.encodeproject.org/documents/8a28904f-c11e-44e2-9f00-19c089cbd563/@@download/attachment/2015-2674.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
24597358
Reads aligned (%)
96.9
Duplicates removed (%)
10.4
Number of peaks
1224 (qval < 1E-05)
hg19
Number of total reads
24597358
Reads aligned (%)
96.5
Duplicates removed (%)
11.0
Number of peaks
1248 (qval < 1E-05)
Base call quality data from
DBCLS SRA