Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample_type
cell line
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Kevin White, UChicago
passage number
4
cell_line
K562
health state
chronic myelogenous leukemia (CML)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
other: https://www.encodeproject.org/documents/8a28904f-c11e-44e2-9f00-19c089cbd563/@@download/attachment/2015-2674.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
24597358
Reads aligned (%)
96.9
Duplicates removed (%)
10.4
Number of peaks
1224 (qval < 1E-05)

hg19

Number of total reads
24597358
Reads aligned (%)
96.5
Duplicates removed (%)
11.0
Number of peaks
1248 (qval < 1E-05)

Base call quality data from DBCLS SRA