Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CCAR2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample_type
cell line
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Xiang-Dong Fu, UCSD
cell_line
K562
health state
chronic myelogenous leukemia (CML)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/e8a2fef1-580b-45ad-b29c-fffc3d527202/@@download/attachment/ChIP-seq_Protocol_for_RNA-Binding_Proteins_ENCODE_Fu_lab_RuiXiao.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
22262167
Reads aligned (%)
67.7
Duplicates removed (%)
7.7
Number of peaks
467 (qval < 1E-05)

hg19

Number of total reads
22262167
Reads aligned (%)
67.1
Duplicates removed (%)
8.8
Number of peaks
717 (qval < 1E-05)

Base call quality data from DBCLS SRA