SRX6784011
GSM4051090: Control ChIP-seq from K562 (ENCLB819FVH); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample_type
cell line
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Kevin White, UChicago
passage number
4
cell_line
K562
health state
chronic myelogenous leukemia (CML)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
other: https://www.encodeproject.org/documents/346071fd-c6fc-4e6b-b5fb-0a0123f65d35/@@download/attachment/2015-3260.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44787517
Reads aligned (%)
97.7
Duplicates removed (%)
7.8
Number of peaks
7196 (qval < 1E-05)

hg19

Number of total reads
44787517
Reads aligned (%)
97.1
Duplicates removed (%)
8.8
Number of peaks
6984 (qval < 1E-05)

Base call quality data from DBCLS SRA