Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample_type
cell line
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Xiang-Dong Fu, UCSD
cell_line
K562
health state
chronic myelogenous leukemia (CML)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/e8a2fef1-580b-45ad-b29c-fffc3d527202/@@download/attachment/ChIP-seq_Protocol_for_RNA-Binding_Proteins_ENCODE_Fu_lab_RuiXiao.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
99877767
Reads aligned (%)
93.2
Duplicates removed (%)
5.3
Number of peaks
8171 (qval < 1E-05)

hg19

Number of total reads
99877767
Reads aligned (%)
92.4
Duplicates removed (%)
5.7
Number of peaks
7966 (qval < 1E-05)

Base call quality data from DBCLS SRA