Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF395

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample_type
cell line
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Kevin White, UChicago
passage number
4
cell_line
K562
health state
chronic myelogenous leukemia (CML)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/33bb3ae1-9402-4274-9513-085403fe8ecc/@@download/attachment/White-Lab-K562-ChIP.pdf other: https://www.encodeproject.org/documents/0b91bf3f-e6a6-4818-aa38-e866f301bcb2/@@download/attachment/2015-2672.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
30027954
Reads aligned (%)
93.3
Duplicates removed (%)
10.3
Number of peaks
14521 (qval < 1E-05)

hg19

Number of total reads
30027954
Reads aligned (%)
92.8
Duplicates removed (%)
10.9
Number of peaks
14441 (qval < 1E-05)

Base call quality data from DBCLS SRA