Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF148

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample_type
cell line
sex
female
dev_stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Kevin White, UChicago
passage number
6
cell_line
K562
health state
chronic myelogenous leukemia (CML)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/33bb3ae1-9402-4274-9513-085403fe8ecc/@@download/attachment/White-Lab-K562-ChIP.pdf other: https://www.encodeproject.org/documents/621f912c-f40e-460d-b4da-b52c941a7ccb/@@download/attachment/2015-3269.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
41810748
Reads aligned (%)
95.4
Duplicates removed (%)
8.8
Number of peaks
19299 (qval < 1E-05)

hg19

Number of total reads
41810748
Reads aligned (%)
94.9
Duplicates removed (%)
9.6
Number of peaks
19200 (qval < 1E-05)

Base call quality data from DBCLS SRA