Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Breast

Cell type

Mammary epithelial cells

NA

NA

Sample

age

50 year

dev stage

unknown

donor ID

ENCDO830BUW

cell type

mammary epithelial cell

sex

female

sample type

primary cell

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

41313356

Reads aligned (%)

98.0

Duplicates removed (%)

9.0

Number of peaks

23224 (qval < 1E-05)

hg19

Number of total reads

41313356

Reads aligned (%)

97.0

Duplicates removed (%)

10.1

Number of peaks

23156 (qval < 1E-05)