Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

age
unknown
donor ID
ENCDO324YEK
dev stage
unknown
sample type
immortalized cell line
sex
female
cell line
CH12.LX
health state
unknown
lab
Michael Snyder, Stanford

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extraction method: see document general protocol: https://www.encodeproject.org/documents/f710178a-26e4-4afa-b925-37e6c9dbad34/@@download/attachment/wgEncodeSydhTfbs.release4.html.pdf

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
42655835
Reads aligned (%)
46.1
Duplicates removed (%)
26.2
Number of peaks
15900 (qval < 1E-05)

mm9

Number of total reads
42655835
Reads aligned (%)
46.0
Duplicates removed (%)
26.4
Number of peaks
15982 (qval < 1E-05)

Base call quality data from DBCLS SRA