Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Lymphoblastoid cell line
Tissue
blood
Lineage
mesoderm
Description
parental cell type to lymphoblastoid cell lines

Attributes by original data submitter

Sample

source_name
lymphoblastoid cell line
biomaterial_provider
GM18505
biomaterial_provider
GM18507
biomaterial_provider
GM18508
biomaterial_provider
GM18516
biomaterial_provider
GM18522
biomaterial_provider
GM19141
biomaterial_provider
GM19193
biomaterial_provider
GM19204
biomaterial_provider
GM19238
biomaterial_provider
GM19239
biomaterial_provider
GM18505
biomaterial_provider
GM18507
biomaterial_provider
GM18508
biomaterial_provider
GM18516
biomaterial_provider
GM18522
biomaterial_provider
GM19141
biomaterial_provider
GM19193
biomaterial_provider
GM19204
biomaterial_provider
GM19238
biomaterial_provider
GM19239
biomaterial_provider
GM18505
biomaterial_provider
GM18507
biomaterial_provider
GM18508
biomaterial_provider
GM18516
biomaterial_provider
GM18522
biomaterial_provider
GM19141
biomaterial_provider
GM19193
biomaterial_provider
GM19204
biomaterial_provider
GM19238
biomaterial_provider
GM19239
biomaterial_provider
GM18505
biomaterial_provider
GM18507
biomaterial_provider
GM18508
biomaterial_provider
GM18516
biomaterial_provider
GM18522
biomaterial_provider
GM19141
biomaterial_provider
GM19193
biomaterial_provider
GM19204
biomaterial_provider
GM19238
biomaterial_provider
GM19239
biomaterial_provider
GM18505
biomaterial_provider
GM18507
biomaterial_provider
GM18508
biomaterial_provider
GM18516
biomaterial_provider
GM18522
biomaterial_provider
GM19141
biomaterial_provider
GM19193
biomaterial_provider
GM19204
biomaterial_provider
GM19238
biomaterial_provider
GM19239
cell line
lymphoblastoid
antibody
none
Sex
pooled sample from all individuals

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was extracted using protocol described in Cain et al. 2011, except that for some samples, chromatin was sheared with a Covaris S2 (settings: 40 minutes, duty cycle 20%, intensity 8, 200 cycles/burst, 500uL at a time in 12 x 24mm tubes). Prepared Illumina sequencing libraries as described by the ENCODE Project Consortium (2011), starting with 20 uL of ChIP output or 4 ng of pooled input sample.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
137567396
Reads aligned (%)
98.2
Duplicates removed (%)
55.5
Number of peaks
1933 (qval < 1E-05)

hg19

Number of total reads
137567396
Reads aligned (%)
97.1
Duplicates removed (%)
57.1
Number of peaks
1949 (qval < 1E-05)

Base call quality data from DBCLS SRA