Antigen

Antigen Class

TFs and others

Antigen

TP53

Cell type

Cell type Class

Digestive tract

Cell type

HCT 116

Primary Tissue

Colon

Tissue Diagnosis

Carcinoma

Sample

source_name

HCT 116

cell type

colorectal carcinoma cells

chip antibody

Anti-p53 AB7 (Calbiochem)

cell line

HCT 116

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

10 ng of the immunoprecipitated chromatin was used to prepare the libraries for sequencing following the manufacturer’s instructions including DNA end repairing, adaptor ligation, and amplification

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

hg19

Number of total reads

17621454

Reads aligned (%)

98.8

Duplicates removed (%)

46.1

Number of peaks

543 (qval < 1E-05)

hg38

Number of total reads

17621454

Reads aligned (%)

99.0

Duplicates removed (%)

45.4

Number of peaks

536 (qval < 1E-05)