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For hg19
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For hg38
BigWig
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Peak-call (q < 1E-10)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TRIM28
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX672002
GSM1467737: huESC KAP1 84; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TRIM28
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
embryonic stem cells, KAP1 ChIP
transchromosomic
no
plasmid
none
chip_or_input
KAP1 ChIP
chip antibody
KAP1 ChIP (abcam ab10483, lot#GR17300)
nickname
KAP1 (hESC) r3
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
O'Geen H, Echipare L, Farnham PJ. Using ChIP-seq technology to generatehigh-resolution profiles of histone modifications. Methods Mol Biol. 2011;791:265-86. doi: 10.1007/978-1-61779-316-5_20. PubMed PMID: 21913086. TrueSeq DNA library prep, low input protocol.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
16171785
Reads aligned (%)
51.4
Duplicates removed (%)
71.1
Number of peaks
213 (qval < 1E-05)
hg38
Number of total reads
16171785
Reads aligned (%)
52.7
Duplicates removed (%)
70.5
Number of peaks
242 (qval < 1E-05)
Base call quality data from
DBCLS SRA