SRX672000
GSM1467735: humanESC inpDNA 66; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells, input
transchromosomic
no
plasmid
none
chip_or_input
input DNA
chip antibody
none
nickname
inpDNA hESC

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
O'Geen H, Echipare L, Farnham PJ. Using ChIP-seq technology to generatehigh-resolution profiles of histone modifications. Methods Mol Biol. 2011;791:265-86. doi: 10.1007/978-1-61779-316-5_20. PubMed PMID: 21913086. TrueSeq DNA library prep, low input protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
53787074
Reads aligned (%)
92.4
Duplicates removed (%)
1.8
Number of peaks
1532 (qval < 1E-05)

hg19

Number of total reads
53787074
Reads aligned (%)
91.8
Duplicates removed (%)
2.1
Number of peaks
724 (qval < 1E-05)

Base call quality data from DBCLS SRA