SRX671992
GSM1467727: muh11ESC inpDNA 94; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells, TC11, empty vector, input
strain/background
129/Ola
transchromosomic
hsa11
plasmid
empty vector
chip_or_input
input DNA
chip antibody
none
nickname
inpDNA mTC11

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
O'Geen H, Echipare L, Farnham PJ. Using ChIP-seq technology to generatehigh-resolution profiles of histone modifications. Methods Mol Biol. 2011;791:265-86. doi: 10.1007/978-1-61779-316-5_20. PubMed PMID: 21913086. TrueSeq DNA library prep, low input protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
30279800
Reads aligned (%)
96.4
Duplicates removed (%)
9.7
Number of peaks
248 (qval < 1E-05)

mm9

Number of total reads
30279800
Reads aligned (%)
96.3
Duplicates removed (%)
9.8
Number of peaks
222 (qval < 1E-05)

Base call quality data from DBCLS SRA