Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pc

Cell type

Cell type Class
Embryo
Cell type
Embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Pc_mixed
tissue
embryo
age
5-13h
tissue subtype
whole embryo
chip antibody
anti-Pc

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were sonicated and ChIP performed using the appropriate antibody. Libraries were prepared as described in Bowman et al., 2013.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
19854812
Reads aligned (%)
44.9
Duplicates removed (%)
49.4
Number of peaks
1337 (qval < 1E-05)

dm3

Number of total reads
19854812
Reads aligned (%)
45.6
Duplicates removed (%)
47.3
Number of peaks
1795 (qval < 1E-05)

Base call quality data from DBCLS SRA