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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Cortical neuron
ATCC
MeSH
RIKEN BRC
SRX671655
GSM1467424: Biological sample #3, KCl stimulated, input DNA; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Neural
Cell type
Cortical neuron
NA
NA
Attributes by original data submitter
Sample
source_name
DIV7 mCTX neurons
cell type
mouse cortical neurons
days in vitro
DIV7
strain
C57BL/6
chip antibody
N/A
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared by BGI (Beijing Genomics Institute) according to standard Illumina protocols.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
25321144
Reads aligned (%)
99.3
Duplicates removed (%)
14.9
Number of peaks
410 (qval < 1E-05)
mm9
Number of total reads
25321144
Reads aligned (%)
99.2
Duplicates removed (%)
15.0
Number of peaks
436 (qval < 1E-05)
Base call quality data from
DBCLS SRA