Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Cortical neuron
NA
NA

Attributes by original data submitter

Sample

source_name
DIV7 mCTX neurons
cell type
mouse cortical neurons
days in vitro
DIV7
strain
C57BL/6
chip antibody
N/A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared by BGI (Beijing Genomics Institute) according to standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
25841705
Reads aligned (%)
99.1
Duplicates removed (%)
9.7
Number of peaks
412 (qval < 1E-05)

mm9

Number of total reads
25841705
Reads aligned (%)
98.9
Duplicates removed (%)
9.7
Number of peaks
449 (qval < 1E-05)

Base call quality data from DBCLS SRA