SRX6709901
GSM4030333: TOX input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD8+ T cells
harvest time
Cells from Homo sapiens
treatment
TOX siRNA transfection

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
H3K27ac was purified with anti-H3K27ac antibody and RNA was extracted from cells using TRIZOL reagent.

Sequencing Platform

instrument_model
NextSeq 550

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
83228028
Reads aligned (%)
97.2
Duplicates removed (%)
15.0
Number of peaks
2713 (qval < 1E-05)

hg19

Number of total reads
83228028
Reads aligned (%)
96.2
Duplicates removed (%)
16.8
Number of peaks
1619 (qval < 1E-05)

Base call quality data from DBCLS SRA