Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Cell line
Cell type
S2

Cell type information


Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by Original Data Submitter


source_name
Dm_S2cell_Biotin_dBRD4-S_ChIPseq_WT_untagged_control_Input
cell line background
S2 cells
genotype/variation
wild type
knockdown or inhibitor treatment
WT
chip antibody
streptavidin T1 magnetic beads (Invitrogen 65601)

Metadata from Sequence Read Archive

Library Description


library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Platform Information


instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

External Database Query

Logs in read processing pipeline


Number of total reads
10503123
Reads aligned (%)
96.9
Duplicates removed (%)
8.5
Number of peaks
1921 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA