SRX669122
GSM1464390: IgG ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
KBM-7
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
KBM7 cells
cell line
KBM7
cell type
chronic myeloid leukemia (CML)
karyotype
near-haploid

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinking: 1% formaldehyde; Shearing: Bioruptor (Diagenode) to target size of 300bp; IP: 5ug primary antibody overnight Illumina TruSeq ChIP Sample Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
42169267
Reads aligned (%)
89.6
Duplicates removed (%)
76.4
Number of peaks
662 (qval < 1E-05)

hg19

Number of total reads
42169267
Reads aligned (%)
88.9
Duplicates removed (%)
78.1
Number of peaks
773 (qval < 1E-05)

Base call quality data from DBCLS SRA