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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: EZH2
wikigenes
PDBj
CellType: DU 145
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6686387
GSM4023636: ChIPseq EZH2 CTR; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
EZH2
Cell type
Cell type Class
Prostate
Cell type
DU 145
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
Human prostate cancer cell line
cell line
DU145
tissue
Human prostate cancer cell line
chip antibody
EZH2 (Cell Signaling #5246) / Drosophila H2Av (Active Motif #61686).
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
(ChIP-seq) Chromatin preparation and ChIP experiments were performed with the ChIP-IT High Sensitivity Kit from Active Motif (#53040) according to the manufacturer's instructions. Libraries were prepared according to Illumina instructions.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
38490499
Reads aligned (%)
83.9
Duplicates removed (%)
5.2
Number of peaks
1481 (qval < 1E-05)
hg19
Number of total reads
38490499
Reads aligned (%)
83.1
Duplicates removed (%)
7.5
Number of peaks
1436 (qval < 1E-05)
Base call quality data from
DBCLS SRA