SRX6686243
GSM4023592: ChIP seq IP UAP56 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
DDX39B

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Erythromyeloblastoid leukemia cell line
cell line
K562
antibody
UAP56 (Proteintech 14798-1-AP)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was extracted from K562 cells, sonicated and immunoprecipitated with UAP56 specific antibody. ThruPLEX DNA-Seq 6S (12rxn) 

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24718426
Reads aligned (%)
96.5
Duplicates removed (%)
6.0
Number of peaks
681 (qval < 1E-05)

hg19

Number of total reads
24718426
Reads aligned (%)
96.0
Duplicates removed (%)
6.1
Number of peaks
589 (qval < 1E-05)

Base call quality data from DBCLS SRA