Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Erythromyeloblastoid leukemia cell line
cell line
K562
antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was extracted from K562 cells, sonicated and immunoprecipitated with UAP56 specific antibody. ThruPLEX DNA-Seq 6S (12rxn) 

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
19903920
Reads aligned (%)
96.8
Duplicates removed (%)
3.4
Number of peaks
572 (qval < 1E-05)

hg19

Number of total reads
19903920
Reads aligned (%)
96.1
Duplicates removed (%)
3.6
Number of peaks
361 (qval < 1E-05)

Base call quality data from DBCLS SRA