Antigen

Antigen Class

TFs and others

Antigen

Nup93-1

Cell type

Cell type Class

Cell line

Cell type

S2

Source

Oregon R

Developmental Stage

late embryonic stage

Sample

source_name

embryonic cells

cell line

S2

cell type

Embryonic cells

genotype/variation

wild type

chip antibody

Nup93 (Pascual-Garcia et al., 2017)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates from embryonic cells were clarified from sonicated nuclei and Nup-DNA complexes were isolated with specific antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model

NextSeq 500

dm3

Number of total reads

49577528

Reads aligned (%)

76.9

Duplicates removed (%)

37.6

Number of peaks

5340 (qval < 1E-05)

dm6

Number of total reads

49577528

Reads aligned (%)

76.4

Duplicates removed (%)

41.4

Number of peaks

4818 (qval < 1E-05)