Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nup93-1

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
embryonic cells
cell line
S2
cell type
Embryonic cells
genotype/variation
wild type
chip antibody
Nup93 (Pascual-Garcia et al., 2017)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

dm3

Number of total reads
49577528
Reads aligned (%)
76.9
Duplicates removed (%)
37.6
Number of peaks
5340 (qval < 1E-05)

dm6

Number of total reads
49577528
Reads aligned (%)
76.4
Duplicates removed (%)
41.4
Number of peaks
4818 (qval < 1E-05)

Base call quality data from DBCLS SRA