Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Nup107

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
embryonic cells
cell line
S2
cell type
Embryonic cells
genotype/variation
wild type
chip antibody
Nup107 (this study)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates from embryonic cells were clarified from sonicated nuclei and Nup-DNA complexes were isolated with specific antibody. Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
NextSeq 500

dm3

Number of total reads
31048958
Reads aligned (%)
90.5
Duplicates removed (%)
22.3
Number of peaks
8518 (qval < 1E-05)

dm6

Number of total reads
31048958
Reads aligned (%)
89.9
Duplicates removed (%)
24.6
Number of peaks
8744 (qval < 1E-05)

Base call quality data from DBCLS SRA