Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Cell line
Cell type
S2

Cell type information


Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by Original Data Submitter


source_name
embryonic cells
cell line
S2
cell type
Embryonic cells
genotype/variation
wild type
chip antibody
IgG (rabbit)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates from embryonic cells were clarified from sonicated nuclei and Nup-DNA complexes were isolated with specific antibody. Libraries were prepared according to Illumina's instructions.

Platform Information


instrument_model
NextSeq 500

External Database Query

Logs in read processing pipeline


Number of total reads
22779139
Reads aligned (%)
94.0
Duplicates removed (%)
15.3
Number of peaks
3209 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA