Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cells
cell line
T47D
antibody
HA antibody, Clone 7
antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were constructed by using Illumina ChIP-Seq library preparation kit as instructed

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
194727588
Reads aligned (%)
98.1
Duplicates removed (%)
48.1
Number of peaks
29871 (qval < 1E-05)

hg19

Number of total reads
194727588
Reads aligned (%)
97.3
Duplicates removed (%)
49.9
Number of peaks
29205 (qval < 1E-05)

Base call quality data from DBCLS SRA