SRX6663600
GSM4011083: Input-gNS FRRC190665536-1a; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
SMMC-7721
NA
NA

Attributes by original data submitter

Sample

source_name
hepatocellular
cell line
SMMC-7721
cell type
hepatocellular carcinoma cell line
genotype/variation
No PTENa/b depletion
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and isolated with antibody. Libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17776926
Reads aligned (%)
93.8
Duplicates removed (%)
13.9
Number of peaks
920 (qval < 1E-05)

hg19

Number of total reads
17776926
Reads aligned (%)
92.9
Duplicates removed (%)
14.3
Number of peaks
316 (qval < 1E-05)

Base call quality data from DBCLS SRA