Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
input from BIX treated RNaseH1 overexpressing cells
cell line
HeLa
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cross-linking with 1% FA, chromatin shearing with bioruptor, IP with PolIIS2ph antibody (abcam ab5095) for ChIP samples, de-crosslinking and purification over Qiagen columns NEBNext ChIP-Seq Library Prep Reagent Set for Illumina according to manufacturer's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
136380454
Reads aligned (%)
98.2
Duplicates removed (%)
20.1
Number of peaks
2395 (qval < 1E-05)

hg19

Number of total reads
136380454
Reads aligned (%)
97.5
Duplicates removed (%)
21.5
Number of peaks
1807 (qval < 1E-05)

Base call quality data from DBCLS SRA