Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
Breast_cell
cell type
Breast
cell line
MCF10A-Er-Src
antibody
none
agent
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
37662541
Reads aligned (%)
98.8
Duplicates removed (%)
2.7
Number of peaks
991 (qval < 1E-05)

hg19

Number of total reads
37662541
Reads aligned (%)
98.2
Duplicates removed (%)
4.3
Number of peaks
1259 (qval < 1E-05)

Base call quality data from DBCLS SRA