SRX6635806
GSM3999755: p63 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
ME-180
Primary Tissue
Cervix
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Cervical cancer cell lines
cell line
ME-180
antibody
none (input)
passages
13-15

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP DNAs were isolated with antibody from whole cell lystaes. Total RNA was isolated from cells or tissues by TRIzol reagent (Invitrogen) according to the manufacturer's protocol.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19243048
Reads aligned (%)
93.9
Duplicates removed (%)
24.9
Number of peaks
2844 (qval < 1E-05)

hg19

Number of total reads
19243048
Reads aligned (%)
93.0
Duplicates removed (%)
25.1
Number of peaks
2602 (qval < 1E-05)

Base call quality data from DBCLS SRA